Best bet is to get it on a Tech2. It will monitor every movement of the top when it opens and closes.
It's not clear from your post if you fitted the roof yourself or had someone else do it. I'm no expert, but if the replacement was because of a leak and not a faulty operating system, it does sound as if something has gone wrong when fitting it, throwing up this new problem that wasn't there before.Good day I own a 2007 saab 9-3 TID right hand drive. I replaced the entire roof because it was leaking and I could not get the canvas alone. The roof now refuse to come out the boot it says manual operation. When I pull it up half way it makes it way to the front but it does not latch and back does not go down. When I manually latch it at the front back goes down windows come up. When I try to put it down it unleashes Saya manual mode when I try again it goes as far as roof entering boot but not sliding all the way down then Saya manual mode only