Very mysterious, but I guess it's good that your motor and transmission oil are OK.
Here's another potentially useless story. My old car, a manual c900 had a whole INCH of oil floating in the coolant reservoir when I bought it. I suspected the head gasket, but it ran very nicely and passed a compression test perfectly. I figured that since there was so much oil there maybe someone made a big mistake topping up the oil.
I cleaned it out and did several flushes, and changed a bunch of hoses. However there was always a little oil in the coolant reservoir. I just figured that there were lots of places for oil to hide in the engine, hoses, radiator and heater. The car ran nicely for the 15K miles I owned it.
So the moral of the story is MAYBE it isn't that big a deal. Maybe it was a minor head leak and the retorque fixed it but there is still oil in the system and will be forever.
You might consider doing several more flushes and fills with just water now that the danger of freezing is almost past. Maybe fill and drain it once a day for a few days, driving it in between. Kind of a pain to do, but it might make your hoses last longer. Once the water stays clean, then you can add antifreeze. I know running just water isn't great, but I would think that a few days in cool spring weather won't do any harm.
EDIT Oh, and just maybe a little mild detergent would speed things along? I dunno, maybe this would be very bad for the metal too. But it is something to consider. The big problem here is that it's hard to get all the fluid out, there's a lot of dead space.